FastQCFastQC Report
Sun 21 May 2023
EGAF00007926694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476145
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43710.9179976687773683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24980.5246301021747577No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21830.45847378424639557No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17650.3706854004557435No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13590.28541725734807677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12840.2696657530794191No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11950.25097396801394534No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10320.21674069873672935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8900.1869178506547375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8800.18481765008558318No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8450.17746694809354294No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.14785412006846654No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6840.14365371893015783No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6610.1388232576211028No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6480.13609299688120216No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6230.13084249545831625No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5750.12076153272637537No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.11950141238488275No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5450.1144609310189123No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4800.100809627319409No Hit

[OK]Adapter Content

Adapter graph