FastQCFastQC Report
Sun 21 May 2023
EGAF00007926695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469441
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26850.5719568593284353No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21840.465234182783353No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17670.376405128653015No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17050.36319793115641796No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16130.34360015422598367No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13210.281398514403301No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12650.26946943279347135No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12630.26904339416454887No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11690.2490195786051921No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11090.2362384197375176No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11000.23432124590736644No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8280.17637999237390853No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA7590.16168165967608283No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7330.15614315750009053No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7100.15124371326748196No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7040.14996559738071452No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6950.14804842355056333No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6780.14442709520472222No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6430.13697141919857872No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4930.10501852202939241No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4800.10224927094139626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)