FastQCFastQC Report
Sun 21 May 2023
EGAF00007926696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469441
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43260.9215215543593338No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34830.7419462722685066No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22060.4699206077015003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19080.4064408519920501No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18960.4038846202185152No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18300.3898253454640732No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13210.281398514403301No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13050.2779902053719211No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12800.27266472251039003No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12350.26307885335963416No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12280.2615877181584054No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11430.24348107642919986No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9480.2019423101092576No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8590.18298359112220705No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8330.17744508894621475No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7900.16828525842438133No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7740.16487694939300146No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG7500.15976448584593164No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7370.1569952347579355No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6810.14506615314810595No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6490.13824953508534618No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5430.11566948775245452No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5160.10991796626200097No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5130.10927890831861724No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4900.10437946408600868No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4880.10395342545708619No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4820.10267530957031874No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4750.10118417436909004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)