FastQCFastQC Report
Sun 21 May 2023
EGAF00007926702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452013
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42200.9336014672144386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.19291480554762805No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5630.1245539398203149No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC5200.11504093908803507No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5160.11415600878735789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)