FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463108
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17300.373562970192698No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10670.23039982034428252No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9620.2077269233094656No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9380.20254454684436463No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8810.1902364027397497No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8260.17836012334055987No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7120.15374383513133005No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5090.10990956753068398No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5040.10882990576712127No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4770.10299973224388265No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4710.10170413812760738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)