FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463108
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44570.9624104960398008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17060.368380593727597No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11270.24335576150703508No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9360.20211268213893951No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9350.20189674978622696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8780.18958860568161207No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7990.17252994981732123No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6710.14489060867011583No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6550.14143569102671513No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5630.12156991457716126No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5290.11422821458493483No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4810.1038634616547328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)