FastQCFastQC Report
Wed 31 May 2023
EGAF00007926705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480572
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17960.373721315432443No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10610.22077857220145994No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10120.21058238931939438No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9620.20017812107238875No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8940.18602831625646105No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8210.1708380846158328No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7230.15044571885170172No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5410.11257418243260114No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4980.1036265117401763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)