FastQCFastQC Report
Sun 21 May 2023
EGAF00007926706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480572
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17850.3714323764181018No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10860.22598070632496278No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10360.21557643807795712No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10010.20829345030505317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9590.1995538649775684No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9220.1918547064747842No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8100.16854914560149156No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7070.14711635301265993No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6710.13962527987481585No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5770.12006525557044523No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5600.11652780436646329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5120.10653970684933788No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC4840.1007133166310147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)