FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474148
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21960.4631465280882763No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14510.30602259210204413No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14220.29990635835224444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12120.25561638981921253No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11760.24802382378497856No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10760.22693336257877286No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9990.2106937074499945No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9000.18981415085585093No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8670.18285429865780306No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8070.17020002193407965No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT7960.16788007120139703No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7320.15438217602942542No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7000.1476332284434396No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6240.1316044779267233No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6230.13139357331466126No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6150.12970633641816479No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6100.1286518133578545No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6070.12801909952166834No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6030.1271754810734201No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5670.11958291503918607No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5630.11873929659093785No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5270.11114673055670381No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC5120.10798316137577296No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG5070.10692863831546268No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5010.10566321064309034No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4920.10376506913453185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)