FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493488
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23570.47762052977985286No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16290.330099212138897No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14540.29463735693674414No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12510.2535016049022469No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12190.2470171513795675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10290.20851570858865867No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10120.20507084265473527No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9590.19433096650779755No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9330.18906234802062055No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT8320.16859579158966378No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8320.16859579158966378No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7740.15684271957980742No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7260.14711603929578834No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6760.13698408066660184No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6430.1302969879713387No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6390.1294864312810038No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6310.12786531790033395No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6250.12664948286483158No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6160.12482573031157798No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5850.11854391596148235No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG5740.11631488506306131No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5560.11266737995655415No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.11084362740330059No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5440.11023570988554938No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5260.10658820477904224No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC5020.10172486463703272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)