FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493488
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31230.6328421359789903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26260.5321304672048763No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17270.3499578510521026No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16490.33415199559057157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12230.2478277080699024No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10440.21155529617741467No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10290.20851570858865867No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9810.19878902830463963No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9490.19230457478196025No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.18744123463995072No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9180.1860227604318646No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG8430.1708248224880848No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8260.16737995655416138No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7180.1454949259151185No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7060.14306325584411372No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6760.13698408066660184No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6750.13678144149401808No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6460.1309049054890899No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6330.1282705962455014No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC6130.1242178127938268No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6010.12178614272282202No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5610.11368057581947281No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11185682326621924No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5440.11023570988554938No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5440.11023570988554938No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5400.10942515319521448No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5340.10820931815971209No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA5080.1029406996725351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)