FastQCFastQC Report
Sun 21 May 2023
EGAF00007926715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451765
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12810.28355450289420386No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10070.22290350071386672No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8770.19412747778158998No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8260.18283842263123526No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8120.17973946631545162No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7260.16070302037563777No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6520.14432282270649563No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6260.1385676181200403No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5690.12595043883434973No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5510.12196606642834217No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5300.11731763195466668No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5130.11355461357121513No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4700.10403639060130819No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT4690.10381503657875223No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4540.1004947262404126No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG4520.10005201819530064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)