FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451765
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41790.9250384602614191No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18040.3993226566909787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.2744789879694089No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10890.2410545305634567No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10630.23529932597700132No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10560.23374984781910946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8000.17708321804477992No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7690.1702212433455447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6940.1536196916538466No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6460.1429946985711598No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.1305988733080252No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5690.12595043883434973No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5600.12395825263134595No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4930.10912753312009563No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA4840.10713534691709184No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4790.10602857680431198No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG4700.10403639060130819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)