FastQCFastQC Report
Wed 31 May 2023
EGAF00007926717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454584
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13010.28619573060204495No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10910.23999964802984708No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9170.20172289389859738No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8980.19754324833254142No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8310.18280449817855446No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6790.14936733365010646No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6570.14452774404730478No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5920.13022895658448164No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5630.12384949756260669No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5500.12098974007004207No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5280.11615015046724038No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5200.11439029970258523No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4840.106470971261637No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT4800.10559104587930944No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4690.10317125107790859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)