FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454584
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42400.9327209052672333No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18540.40784541470883273No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12460.27409675659504074No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11730.2580381183675624No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10370.22812065536842477No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10010.22020132692747654No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7830.17224539359062352No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7080.15574679267198144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6560.1443077627017229No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6440.14166798655474017No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6380.1403480984812488No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG6200.13638843426077468No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5870.12912904985657214No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.1157101877760766No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5170.11373035566583954No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA4890.1075708779895465No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG4670.1027312883867448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)