FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492878
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45830.9298447080210518No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19270.3909689618932068No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16010.3248268334151656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15830.3211748140513474No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14600.2962193483985895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12690.257467365149185No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12070.24488818734047776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10970.22257029122825528No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10220.20735354387901267No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9400.19071656677717405No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6930.14060274550700172No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6800.13796517596646635No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6770.13735650607249664No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6660.13512471646127439No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6660.13512471646127439No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6400.1298495773802036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6300.12782067773363792No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6000.1217339787939409No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5860.11889351928874893No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5570.11300971031370846No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.11240104041973875No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5050.10245943215156691No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4990.10124209236362751No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4970.10083631243431439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)