FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498074
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47430.952268136863197No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18250.3664114167774266No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16440.3300714351682682No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16180.3248513273128089No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14600.29312913342194136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12630.25357677774788484No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12470.2503644036829869No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10730.21542983572722124No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10600.21281978179949163No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10250.2057927135325273No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7550.15158390118737375No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7230.1451591530575778No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6910.1387344049277818No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.13752976465344507No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6620.13291197693515422No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6570.1319081100398736No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6290.12628645542630212No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6210.12468026839385313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.12387717487762863No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5410.10861839806936319No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5250.1054060240044652No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.10018591614900597No Hit

[OK]Adapter Content

Adapter graph