FastQCFastQC Report
Sun 21 May 2023
EGAF00007926724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500135
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21800.43588231177582054No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13940.2787247443190339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12840.2567306827156668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12280.24553370589940715No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10170.20334509682385757No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9270.18534995551201175No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9270.18534995551201175No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.18355044138082716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9130.18255071130794687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8450.16895438231677445No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8000.15995681166085157No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7240.14476091455307066No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6870.13736291201375628No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6610.1321643156347786No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6130.1225669069351275No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6040.12076739280394294No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5790.11576874243954133No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC5730.11456906635208494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)