FastQCFastQC Report
Sun 21 May 2023
EGAF00007926726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502206
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23050.458975002289897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13790.2745885154697475No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12610.2510921812961215No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12080.24053874306559458No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10510.2092766713261092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.2003162049039637No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10050.20011708342791606No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8940.1780145995866238No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8790.17502777744590864No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8620.1716427123530981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7910.157505087553713No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7590.15113320032018734No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7040.14018151913756507No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6750.1344069963321824No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6540.13022544533518118No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6300.1254465299100369No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC6040.12026937153279729No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5460.108720325922032No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5260.10473789640107845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)