FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487109
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45510.9342878082728916No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21370.43871084295301466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13140.2697548187366688No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12010.24655672549675742No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11350.2330073967017649No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9560.196259974666861No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9230.18948531026936477No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8930.1833265244534591No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8450.17347246714801No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7890.16197606695831937No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7650.15704903830559483No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7100.1457579309764344No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7040.1445261738132533No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6110.12543393778394568No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5920.1215333734338721No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5870.12050690913122115No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC5560.11414283045478528No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5020.10305701598615503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)