FastQCFastQC Report
Sun 21 May 2023
EGAF00007926729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498364
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21360.4286023870102977No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13720.2753007841657905No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13460.2700837139119198No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13310.26707386568853286No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT13090.2626594216275654No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT12870.2582449775665979No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12300.24680755431772758No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10950.2197189203072453No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10640.21349856731224565No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10590.21249528457111666No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA10560.21189331492643934No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10340.20747887086547184No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10140.20346573990095593No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG9620.1930315993932146No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG9210.18480468091595703No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8850.1775810451798284No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8700.17457119695644147No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8590.17236397492595773No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8510.1707587225401514No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8220.16493968264160333No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7820.15691342071257153No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7430.14908781533176554No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7320.14688059330128178No Hit
CAGGAAACCACGTTCTGCGGACATCTGCAGGCTACGCAGTGCCG7290.1462786236566044No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7130.14306811888499169No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6760.13564382660063729No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6660.13363726111837934No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6610.13263397837725036No Hit
TGGTTCAACACGGGACACCATGTCGCAGTTATCCGGGGTCAGCA6600.13243332182902456No Hit
GCTGTCGGTTTCCAGGATAGTCAGCAGCGGCTCGCGAATTTTCG6250.12541034264112175No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5990.1201932723872511No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5960.11959130274257371No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5940.11918998964612212No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5540.11116372771709032No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC5530.11096307116886452No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5510.11056175807241293No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5450.10935781878305816No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5430.10895650568660657No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5370.1077525663972518No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5280.10594665746321967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)