FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485636
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21370.44004151257320295No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13170.27119076839443534No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT13030.26830795081089537No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12980.26727837310248825No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12260.25245245410142575No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT12010.24730456555939018No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11990.2468927344760273No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11190.2304194911415134No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA10750.22135920730753075No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10650.21930005189071652No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10560.2174468120155837No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10290.21188709239018522No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9790.20159131530611404No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG9630.19829666663921125No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8630.17770511247106885No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8350.17193947730398898No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8300.17090989959558187No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8280.17049806851221905No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8130.16740933538699768No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7790.16040820696982924No Hit
CAGGAAACCACGTTCTGCGGACATCTGCAGGCTACGCAGTGCCG7390.1521715853025723No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7370.15175975421920945No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA6950.14311130146858966No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6820.1404343994267311No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6740.13878707509327973No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6700.13796341292655404No Hit
TGGTTCAACACGGGACACCATGTCGCAGTTATCCGGGGTCAGCA6570.13528651088469554No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6370.13116820005106705No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6270.12910904463425282No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6170.12704988921743857No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5900.12149016959204013No Hit
GCTGTCGGTTTCCAGGATAGTCAGCAGCGGCTCGCGAATTTTCG5820.11984284525858875No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5600.1153127033415974No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC5580.11490087225823457No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.11304763238310174No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5430.1118121391330132No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5370.11057664588292465No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5340.1099588992578804No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5190.10687016613265903No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5120.10542875734088905No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4900.10089861542389775No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4860.10007495325717204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)