FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485636
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45370.9342388126086204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21260.43777644161470736No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14640.3014603530216047No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14320.2948710556877991No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13740.2829279542702765No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG13230.2724262616445239No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13110.2699552751443468No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11800.24298033918408027No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11780.2425685081007174No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC11650.2398916060588589No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11380.23433188643346042No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11200.2306254066831948No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11040.22733075801629204No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10970.22588934922452208No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10930.22506568705779637No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10600.2182704741823094No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10150.20900427480664532No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9980.2055037105980611No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC9890.20365047072292827No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8570.1764696192209803No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8480.1746163793458475No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8430.1735868016374404No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA8140.1676152509286791No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7980.1643206022617763No Hit
GGCATTGACGAGAACGTCTGCACTATGAAAC7430.152995247469298No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7230.14887693663566953No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7110.14640595013549243No Hit
AAAGAAGTAGTCTGTGCGAGCTCCAGCGACA6780.13961073726000542No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6760.1391989061766426No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6680.1375515818431912No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6280.12931496017593425No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6280.12931496017593425No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC6010.12375524055053579No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5940.12231383175876584No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA5610.11551861888327883No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5610.11551861888327883No Hit
CGTAAACTGCACGAATGGGAAAGCCGTACCA5600.1153127033415974No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5580.11490087225823457No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG5580.11490087225823457No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5380.11078256142460609No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5250.10810565938274756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5060.10419326409080053No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5030.10357551746575624No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5020.10336960192407482No Hit
ATGTCCGACACCAAAACCAGCACTGGTTCTA4940.10172227759062344No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4880.10048678434053489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)