FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487185
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47460.9741679238892823No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43860.9002740232150005No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20730.42550571138273957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19370.3975902377946776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14490.2974229502139844No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG11260.23112370044233707No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10410.21367652944979834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10370.21285548610897298No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.16585075484672146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7940.16297710315383274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.15764032143846793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7410.1520982788878968No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6130.12582489198148547No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6080.12479858780545378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)