FastQCFastQC Report
Wed 31 May 2023
EGAF00007926739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518600
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT36840.7103740840725028No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36480.7034323177786348No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC35100.6768222136521403No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26270.5065561126108754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25920.49980717315850365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25820.4978789047435403No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21230.4093713844967219No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20530.3958735055919784No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19630.37851908985730814No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18400.3548013883532588No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17460.3366756652526032No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16870.3252988816043193No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16630.32067103740840724No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16190.31218665638256843No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13840.2668723486309294No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11130.21461627458542232No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10760.20748168145005788No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10470.2018897030466641No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10110.19494793675279598No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9500.18318549942151946No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9440.18202853837254146No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8710.1679521789433089No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8680.16737369841881988No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8460.1631315079059005No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8200.15811801002699577No Hit
CTGAGCTGCAGCGCTCGCACGCTGGGACGCAGAGAAAGATGCGT8140.15696104897801774No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7990.15406864635557269No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7950.15329733898958736No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7300.1407635942923255No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6920.1334361743154647No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6700.1291939838025453No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6550.12630158118010026No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6540.12610875433860394No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6390.12321635171615888No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6390.12321635171615888No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT6380.12302352487466256No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6330.12205939066718087No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6210.11974546856922483No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.11916698804473583No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5970.11511762437331277No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5650.10894716544543001No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5610.10817585807944466No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5580.10759737755495564No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5300.10219822599305824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)