FastQCFastQC Report
Sun 21 May 2023
EGAF00007926741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525479
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20660.3931650931816495No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15780.30029744290447385No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13850.263569048430099No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13530.2574793664447104No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11880.22607944370755065No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11620.22113157709442244No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11150.21218735667838298No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10650.2026722285762133No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10510.20000799270760583No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10410.19810496708717187No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9000.1712723058390535No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8930.16994018790474977No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8650.16461171616753478No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8580.16327959823323102No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8560.1628989931091442No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8360.15909294186827636No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8180.1556674957514953No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7950.15129053682449725No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT7920.1507196291383671No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7750.14748448558362942No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7710.14672327533545584No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7180.13663723954715604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6810.1295960447515505No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6700.12750271656907317No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6180.11760698334281675No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5900.11227851160560175No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5350.10181187069321514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)