FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525479
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49310.9383819334359698No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22860.4350316568311959No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22320.42475531848085274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21230.4040123392181229No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20630.39259418549551933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18930.36024274994814254No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18690.35567548845910113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13250.25215089470749547No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13150.25024786908706154No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11880.22607944370755065No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11130.21180675155429615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10140.19296679791200028No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9820.18687711592661171No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9680.18421288005800424No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9610.18288076212370047No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9390.17869410575874584No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8660.16480201872957817No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8320.15833173162010278No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8260.15718991624784245No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG8130.15471598294127833No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8060.1533838650069746No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7090.1349245164887655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7000.13321179343037495No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6310.12008091664938085No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6230.11855849615303371No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.11303972185377532No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5450.10371489631364908No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5350.10181187069321514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)