FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545307
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20680.3792359166487868No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17330.31780263227869804No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15140.27764176876511765No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14630.26828923890579065No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12280.22519424837751947No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11940.2189592284713015No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11800.216391867333447No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11160.2046553592746838No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10920.2002541687526476No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10510.1927354682775024No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10200.18705059718653896No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10190.18686721424812078No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9160.1679787715910487No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9160.1679787715910487No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9080.1665117080837033No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8790.1611936028695762No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8760.16064345405432168No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT8740.16027668817748536No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8420.15440843414810373No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG8210.15055739244132205No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7970.14615620191928583No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7360.13496984267577714No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6980.12800129101588645No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6950.12745114220063192No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6460.11846537821814133No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5770.10581195546728722No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5470.10031046731474197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)