FastQCFastQC Report
Sun 21 May 2023
EGAF00007926744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545307
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24280.44525377447933No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22640.4151789725787492No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22400.410777782056713No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21490.394089934660659No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20090.36841632328211443No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19960.3660323450826782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14540.2666387924600271No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13990.25655273084702745No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12890.23638060762102817No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11820.21675863321028338No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11370.2085064009814655No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10920.2002541687526476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10790.1978701905532113No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10260.188150894817048No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10090.18503338486393903No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9700.17788145026563018No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9520.17458055737410302No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9270.16999598391364865No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG9050.16596155926844877No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA9010.16522802751477608No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8540.15660902940912183No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7440.13643690618312254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.13570337442944982No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6520.11956567584865038No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5900.1081959336667235No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5840.10709563603621447No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.10709563603621447No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5520.10122738200683284No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5470.10031046731474197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)