FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430711
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19150.44461367366981575No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17040.39562490858139215No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9100.21127856033395942No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8330.19340114369031672No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7250.16832632554079185No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6530.1516097801077753No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6090.14139411345426514No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5730.13303584073775687No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5540.1286245301373775No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4740.1100505907673591No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4670.10842537107248248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)