FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464580
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74611.6059666795815577No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43970.946446252529166No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC33210.7148392096086787No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32440.6982650996599078No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18210.391966937879375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14500.3121098626716604No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13810.29725773817211243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13280.2858495845710104No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT12760.2746566791510612No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12400.26690774462955785No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12170.2619570364630419No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11940.25700632829652587No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC11680.25140987558655126No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9210.1982435748417926No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8200.1765035085453528No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8140.1752120194584356No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7800.167893581299238No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7010.15088897498816134No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6430.13840458048129495No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5580.12010848508330105No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5020.10805458693874037No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4990.10740884239528177No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4930.10611735330836455No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4730.10181238968530715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)