FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438935
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG26520.6041896864000365No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21060.47979769214120543No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19750.44995272648569834No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18980.4324102657568888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18860.4296763757731783No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18740.4269424857894677No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17250.39299668515839475No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15090.34378666545160447No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14570.33193980885552526No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13320.30346178819187347No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12500.28478020663651793No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11650.26541515258523474No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11490.2617699659402873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11060.25197352683199103No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10170.231697176119471No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10050.22896328613576045No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9720.22144508868055637No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9680.2205337920193195No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9430.21483818788658915No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8690.19797919965370728No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG8510.1938783646781414No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8460.19273924385159533No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7940.18089238725551618No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7870.1792976180983517No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7810.1779306731064964No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7740.1763359039493319No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7330.1669951131716541No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7130.1624386298654698No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7080.16129950903892376No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6850.15605955323681184No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA6830.15560390490619339No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6500.1480857074509893No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6230.14193445498764054No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6220.14170663082233131No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5960.13578320252429177No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5490.1250754667547587No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5420.12348069759759417No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5380.1225694009363573No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5370.1223415767710481No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5210.11869639012610067No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5140.11710162096893617No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4980.11345643432398875No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4950.1127729618280611No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4910.11186166516682423No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4830.11003907184435054No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4800.10935559934842289No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4640.10571041270347546No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4580.10434346771162016No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4520.10297652271976489No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4510.10274869855445568No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4460.1016095777279096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)