FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438935
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41890.954355428480299No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG26360.6005444997550891No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23770.5415380409400026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21440.4884550104229555No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20630.47000125303290924No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20230.4608882864205406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19320.44015628737740214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18830.42899290327725065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18760.42739813412008615No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15410.3510770387414993No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13240.30163919486939983No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12520.2852358549671364No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC12290.27999589916502443No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12260.2793124266690968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12070.27498376752822173No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10500.23921537357467507No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10360.2360258352603461No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9820.22372333033364847No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9740.2219007370111748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9180.20914258375385875No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8550.19478966133937828No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8320.18954970553726633No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8250.18795493638010183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8050.18339845307391756No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7960.1813480355861346No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7670.1747411347921674No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7580.17269071730438448No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7460.1699568273206739No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7430.16927335482474626No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7190.1638055748573251No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT7150.16289427819608826No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6790.15469260824495656No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6660.15173089409593674No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6620.15081959743469991No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6270.1428457516488774No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6270.1428457516488774No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6160.14033968583047604No Hit
TACGACGACTTCCATACCGATGAAGATAAAC6060.1380614441773839No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5880.13396060920181804No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5460.12439199425883103No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5380.1225694009363573No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5340.12165810427512047No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5260.11983551095264675No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5240.11937986262202831No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5090.1159625001423901No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5070.11550685181177167No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4980.11345643432398875No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4960.11300078599337032No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4930.11231731349744267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4910.11186166516682423No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4880.1111781926708966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4800.10935559934842289No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4790.10912777518311367No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4710.10730518186063996No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4630.10548258853816624No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4530.1032043468850741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)