FastQCFastQC Report
Sun 21 May 2023
EGAF00007926765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425359
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25580.6013743684746297No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21430.5038097230809739No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19280.4532641839011282No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19070.4483271777486782No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18760.44103921628553766No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17510.41165227490190637No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16960.39872202069310864No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13690.3218457820335293No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13630.320435208847115No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12950.30444871273441965No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12180.2863463568421028No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11110.26119113501771446No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10820.254373364616712No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10520.2473204986846405No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10220.24026763275256902No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9690.22780756960590937No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9150.21511241092818068No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8850.20805954499610915No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8820.20735425840290203No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8340.1960696729115876No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8250.19395381313196616No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8170.19207304888341378No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG8010.18831152038630897No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7960.1871360427309637No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7950.18690094719989467No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7530.17702693489499458No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7210.16950387790078497No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6610.155398146036642No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA6610.155398146036642No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6590.1549279549745039No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6210.14599432479388No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6200.14575922926281093No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6110.14364336948318948No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5980.14058712757929184No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5830.1370606946132561No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5660.13306407058508227No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5600.13165349739866797No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5550.1304780197433227No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5300.12460063146659646No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5260.12366024934232026No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5180.12177948509376785No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5050.1187232431898702No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4950.11637228787917969No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4790.1126107593820749No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4750.1116703772577987No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4730.11120018619566059No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4660.10955451747817727No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4650.10931942194710821No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4480.10532279791893437No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4400.10344203367038196No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4340.10203146048396766No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4310.10132617389076051No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4300.10109107835969146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)