FastQCFastQC Report
Wed 31 May 2023
EGAF00007926766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425359
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39800.9356802136548187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39800.9356802136548187No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24860.5844474902376581No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23090.5428355812384362No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20540.48288622081582855No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20340.47818431019444757No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19560.4598468587710616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18970.4459762224379877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18570.43657240119522567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17760.41752966317863266No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13660.32114049544032214No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12790.30068718423731483No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC12160.28587616577996466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11590.27247572050902885No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11200.26330699479733594No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11120.2614262305487835No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10620.249671453995331No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10090.23721139084867138No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9380.22051960814276883No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9150.21511241092818068No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8990.21135088243107586No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8110.19066247569699948No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8000.18807642485523993No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC7550.17749712595713268No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7190.1690336868386469No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7190.1690336868386469No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7160.16832840024543974No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7100.16691782705902544No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7000.16456687174833493No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT6970.16386158515512778No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6510.1530471907259515No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6470.1521068086016753No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6360.14952075775991575No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6220.14622942032494904No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6190.1455241337317419No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5820.13682559908218703No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5820.13682559908218703No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5700.13400445270935846No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5660.13306407058508227No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5630.13235878399187512No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5580.13118330633652986No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5220.12271986721804405No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5100.11989872084521545No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5040.11848814765880115No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4940.11613719234811065No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4890.1149617146927654No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4810.113080950444213No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4790.1126107593820749No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4620.10861413535390106No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4610.10837903982283202No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4600.10814394429176297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4560.10720356216748676No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4530.10649827557427961No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4480.10532279791893437No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4430.10414732026358911No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4280.10062088729755336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)