FastQCFastQC Report
Wed 31 May 2023
EGAF00007926788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27300.5427791485326074No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26470.5262770718556088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16150.3210946244982275No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13760.2735765964765084No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13150.26144856421991897No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13040.25926154200971435No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10190.20259778474532125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7690.1528927345133975No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC7640.151898633508759No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7480.1487175102939159No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.11750273874826778No Hit
CGTGAAGCTCTGGATGCGCTGGCGGAGTCTA5230.10398296508518452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)