FastQCFastQC Report
Wed 31 May 2023
EGAF00007926789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479811
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15630.32575326534823085No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14750.3074127104213951No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14330.29865926375176893No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12930.2694811081863484No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11010.22946535198234305No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10960.22842327499786375No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9400.19591047308210943No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7340.15297690132156203No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6500.1354700079823097No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5960.1242155765499332No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5520.11504529908651531No Hit
TTGTTCGGCGGCGACCTGCTGTTCGCGAGCACGTTCAGCGTTGT5330.11108540654549395No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5030.10483294463861813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)