FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455427
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37140.8154984223596756No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24250.5324673328546616No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11990.263269415295975No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9820.21562182303640318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9200.20200822524795412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8510.18685760835435755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8000.17565932630256878No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7410.16270445098775435No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6950.15260403972535663No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6850.15040829814657453No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5960.13086619809541375No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5930.13020747562177912No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.13020747562177912No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5570.12230280593816352No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5480.12032663851725962No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4990.1095675047812273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4860.10671304072881055No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4620.10144326093973349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)