FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470666
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42630.9057378268241174No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41900.8902278898412037No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37020.7865450234348774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25460.540935610390383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16990.36097784841055014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15670.33293248290719957No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13580.28852732086022786No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13540.28767746129952027No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11750.24964624595785545No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11700.24858392150697095No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11460.2434847641427254No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7570.160835921863912No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7030.14936281779435948No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5960.12662907454543137No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5110.108569558880395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)