FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470364
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59881.273056611475368No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27530.5852913913479774No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21010.44667534079989113No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17930.381194139007237No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15490.3293194207039654No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15170.3225161789592741No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14510.3084844928608482No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14200.30189385242067845No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12810.2723422710921754No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12430.2642634215203545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10620.22578258540194404No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10340.21982974887533913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9250.19665620668248418No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9110.19367978841918176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9040.1921915792875305No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8940.19006556624231447No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6980.14839571055607997No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6910.14690750142442874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6580.1398916583752158No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6450.13712784141643494No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6090.12947419445365715No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.12500956705870347No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5430.11544250835523126No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.10608805095628066No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4980.10587544965175906No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4940.10502504443367265No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4760.10119822095228377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)