FastQCFastQC Report
Sun 21 May 2023
EGAF00007926803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477737
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23340.4885533253652114No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19830.415081938388695No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14280.2989092324856563No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13700.28676866141831175No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC13460.2817449768387209No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12510.2618595587111737No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG11700.24490462325505455No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10770.22543784550913995No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10760.22522852531832366No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG10750.2250192051275074No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10380.21727435806730483No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8350.17478235933159877No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8310.1739450785683336No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT8050.1685027536071102No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG7920.16578159112649846No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7020.14694277395303273No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6940.14526821242650245No Hit
TAGTGCGCGTCTCAGGCCGGCCGACTTGTCGGACAAATTCCCTG6930.14505889223568616No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5740.12014978952854813No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5400.11303290304079441No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5360.11219562227752927No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5330.1115676617050804No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5260.1101024203693664No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5150.10779989827038726No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5020.10507873578977556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)