FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477737
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30620.6409384242794676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20930.43810715937848654No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16600.3474715167550347No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15960.33407502454279236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15560.32570221691014095No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14200.29723467095912603No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13150.27525605092341604No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG13100.27420944996933455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12660.264999361573418No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG12520.26206887890199No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11560.24197414058362657No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11320.23695045600403572No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA10300.21559979654077452No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8470.1772942016213942No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8080.16913071417955905No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC8030.16808411322547762No Hit
ATGGCAGCTCGTAAGAAAAAACGCGAACTGT7450.15594354215813302No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7360.15405966044078648No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7220.15112917776935847No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6950.14547753261731874No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6240.13061579906936244No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5840.122242991436711No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5400.11303290304079441No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5310.11114902132344784No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5270.11031174056018268No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5190.10863717903365241No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5000.10466009540814297No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4850.10152029254589867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)