FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457000
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21060.4608315098468272No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19420.42494529540481396No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13640.29846827133479215No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12620.2761487964989059No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12230.2676148796498906No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11690.25579868708971554No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG10860.23763676148796498No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG10460.22888402625820567No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10280.22494529540481398No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10150.22210065645514224No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG9770.2137855579868709No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8340.1824945295404814No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT8130.17789934354485779No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7670.16783369803063458No Hit
TAGTGCGCGTCTCAGGCCGGCCGACTTGTCGGACAAATTCCCTG6990.15295404814004376No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG6670.14595185995623633No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6660.14573304157549236No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6640.14529540481400438No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5430.11881838074398249No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5050.11050328227571116No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5040.11028446389496718No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5010.10962800875273523No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5000.10940919037199125No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4930.10787746170678336No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4660.10196936542669584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)