FastQCFastQC Report
Wed 31 May 2023
EGAF00007926806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457000
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39260.8590809628008752No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27340.5982494529540482No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20290.4439824945295405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15530.33982494529540486No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15340.33566739606126916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14050.30743982494529537No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12910.2824945295404814No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12500.2735229759299781No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12090.26455142231947487No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11510.25185995623632385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10690.23391684901531729No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10680.23369803063457328No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA9250.2024070021881838No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC8270.18096280087527353No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8040.1759299781181619No Hit
ATGGCAGCTCGTAAGAAAAAACGCGAACTGT7580.16586433260393874No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7510.16433260393873086No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6840.14967177242888402No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6800.1487964989059081No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6680.14617067833698033No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5620.12297592997811817No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5200.1137855579868709No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT4890.10700218818380744No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4870.10656455142231946No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4860.10634573304157549No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT4800.1050328227571116No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4730.10350109409190372No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4590.10043763676148797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)