FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477871
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19860.4155933295805772No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12710.2659713604717591No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11570.24211555001245108No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11250.23541918216422425No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9880.20675035731400315No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9790.20486700385668935No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9590.2006817739515476No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8120.16992033414875563No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7290.1525516300424173No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7260.15192384555664604No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7200.1506682765851035No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6950.1454367392036763No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6630.13874037135544948No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6560.13727554088864988No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6370.1332995724787652No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5740.12011609827756863No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5530.11572160687716977No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5070.10609557809534373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)