FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455288
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.39623271423802076No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11930.26203194461527646No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11000.24160531355976878No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10410.22864648310519936No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10010.21986083533938958No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9860.21656621742721088No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9600.21085554637943457No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8000.17571295531619546No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7370.16187556008504508No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7280.15989878933773788No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7270.15967914814359263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7010.15396847709581626No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6830.15001493560120188No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6060.13310256365201806No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6030.13244364006958234No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5680.12475619827449877No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4950.10872239110189595No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4840.10630633796629826No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4740.10410992602484581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)