FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455288
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40510.8897664774823847No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24150.530433483860765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17620.3870077840839205No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12090.2655462037216004No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10790.23699284848271865No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9530.20931805802041786No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8590.18867178577076488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8140.17878793203422888No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8040.17659152009277646No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7910.17373618456888826No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7190.15792201859043067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6810.14957565321291139No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6600.14496318813586126No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6160.1352989755934705No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5780.12695261021595122No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5560.12212050394475585No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5140.11289557379065558No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5000.10982059707262218No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4770.10476884960728154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)