FastQCFastQC Report
Sun 21 May 2023
EGAF00007926815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486236
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20300.4174927401508733No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13520.27805427816944855No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11530.23712764994776198No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11210.2305464836005561No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10440.21471055207759196No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10420.2142992291808916No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9970.2050444640051333No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8310.1709046635790028No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8050.16555746592189802No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7480.15383476336593752No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7340.15095550308903496No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7270.14951587295058366No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7040.14478565963852943No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7000.1439630138451287No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6130.12607046783866271No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6130.12607046783866271No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5930.12195723887165903No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5120.10529866155529415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)