FastQCFastQC Report
Wed 31 May 2023
EGAF00007926817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481538
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT21590.448355062321146No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18600.3862623510501767No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18170.37733263003127476No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16180.3360067118275193No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15820.32853066632332234No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12790.26560728332966455No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12120.2516935319746313No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9770.20289156826667887No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9570.19873820965323608No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9520.1976998699998754No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9520.1976998699998754No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8390.1742333938339238No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8280.17194904659653026No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7890.1638499973003169No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7750.16094264627090696No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT7550.1567892876574642No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7110.14765189870789014No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7090.14723656284654585No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6450.13394581528352903No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6260.13000012460075838No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6210.1289617849473977No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6190.12854644908605342No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.12709277357134846No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6030.12522376219529924No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5600.11629404117639729No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5450.11317902221631522No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5440.11297135428564309No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA5420.11255601842429881No Hit
GACGAAGGTTTCGGAGCCTACGTAGGTAGAACGCGGACCTTTAC5350.11110234290959385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)