FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481538
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG21750.45167774921190024No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20040.4161665330669646No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18870.3918693851783245No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17180.35677350489473314No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16200.3364220476888636No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15110.31378624324560056No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14990.3112942280775349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14590.3029875108506494No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12540.2604155850628611No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA12490.2593772454095004No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10620.2205433423738106No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10350.21493630824566284No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9400.19520785483180975No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8960.18607046588223566No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8810.1829554469221536No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8590.17838675244736657No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8580.17817908451669442No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8350.17340272211123525No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG7370.15305126490536572No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7110.14765189870789014No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6740.13996818527302102No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6570.1364378304515947No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6560.13623016252092254No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6180.1283387811553813No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5980.12418542254193854No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5840.12127807151252862No Hit
TCTCTGCAACAGGTAAGCGGCCACGGTTCCG5820.12086273565118434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5820.12086273565118434No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5690.11816305255244655No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5630.11691704496841371No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5560.11546336945370873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4870.10113428223733122No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4820.10009594258397053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)